rpoF protein (Methanococcus maripaludis S2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rpoF

DNA-directed RNA polymerase subunit F; Citation: J. Bacteriol. 181:4424. (107 aa)

Predicted Functional Partners:

rpoH

0.988

rpoB2

0.985

rpoK

0.980

rpoB1

0.980

rpoA1

0.978

rpoA2

0.977

MMP0248

0.975

rpoL

0.975

rpoN

0.974

rpl21e

0.973

Your Current Organism:

Methanococcus maripaludis S2

NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMP0248	rpl21e	MMP0248	MMP0093	DNA-directed RNA polymerase related protein.	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	0.820
MMP0248	rpoA1	MMP0248	MMP1363	DNA-directed RNA polymerase related protein.	RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.980
MMP0248	rpoA2	MMP0248	MMP1364	DNA-directed RNA polymerase related protein.	RNA polymerase, A/beta'/A' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.978
MMP0248	rpoB1	MMP0248	MMP1362	DNA-directed RNA polymerase related protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.947
MMP0248	rpoB2	MMP0248	MMP1361	DNA-directed RNA polymerase related protein.	DNA-directed RNA polymerase subunit B; Belongs to the RNA polymerase beta chain family.	0.955
MMP0248	rpoF	MMP0248	MMP0092	DNA-directed RNA polymerase related protein.	DNA-directed RNA polymerase subunit F; Citation: J. Bacteriol. 181:4424.	0.975
MMP0248	rpoH	MMP0248	MMP1360	DNA-directed RNA polymerase related protein.	RNA polymerase H/23 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.	0.993
MMP0248	rpoK	MMP0248	MMP1327	DNA-directed RNA polymerase related protein.	DNA-directed RNA polymerase, subunit K.	0.996
MMP0248	rpoL	MMP0248	MMP0261	DNA-directed RNA polymerase related protein.	DNA directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.	0.990
MMP0248	rpoN	MMP0248	MMP1326	DNA-directed RNA polymerase related protein.	DNA-directed RNA polymerase, subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family.	0.996
rpl21e	MMP0248	MMP0093	MMP0248	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	DNA-directed RNA polymerase related protein.	0.820
rpl21e	rpoF	MMP0093	MMP0092	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	DNA-directed RNA polymerase subunit F; Citation: J. Bacteriol. 181:4424.	0.973
rpl21e	rpoH	MMP0093	MMP1360	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	RNA polymerase H/23 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.	0.595
rpl21e	rpoK	MMP0093	MMP1327	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	DNA-directed RNA polymerase, subunit K.	0.890
rpl21e	rpoL	MMP0093	MMP0261	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	DNA directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.	0.851
rpl21e	rpoN	MMP0093	MMP1326	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	DNA-directed RNA polymerase, subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family.	0.799
rpoA1	MMP0248	MMP1363	MMP0248	RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase related protein.	0.980
rpoA1	rpoA2	MMP1363	MMP1364	RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, A/beta'/A' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA1	rpoB1	MMP1363	MMP1362	RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA1	rpoB2	MMP1363	MMP1361	RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit B; Belongs to the RNA polymerase beta chain family.	0.999