MMP0110 protein (Methanococcus maripaludis S2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MMP0110

ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002. (322 aa)

Predicted Functional Partners:

afuB_1

0.989

modB-2

0.970

MMP0108

0.964

MMP1650

0.922

modB

0.889

MMP0551

0.866

MMP0484

0.856

MMP0208

0.852

MMP0751

0.848

MMP1519

0.827

Your Current Organism:

Methanococcus maripaludis S2

NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMP0108	MMP0110	MMP0108	MMP0110	ABC-type Iron(III)-binding periplasmic protein precursor.	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	0.964
MMP0108	afuB_1	MMP0108	MMP0109	ABC-type Iron(III)-binding periplasmic protein precursor.	ABC-type transporter permease protein.	0.998
MMP0110	MMP0108	MMP0110	MMP0108	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	ABC-type Iron(III)-binding periplasmic protein precursor.	0.964
MMP0110	MMP0208	MMP0110	MMP0208	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Conserved hypothetical protein; Contains 4Fe-4S motif.	0.852
MMP0110	MMP0484	MMP0110	MMP0484	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Possible sodium/proton antiporter.	0.856
MMP0110	MMP0551	MMP0110	MMP0551	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Binding-protein-dependent transport systems inner membrane component.	0.866
MMP0110	MMP0751	MMP0110	MMP0751	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Conserved hypothetical archaeal protein.	0.848
MMP0110	MMP1519	MMP0110	MMP1519	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Anion transport system permease protein.	0.827
MMP0110	MMP1650	MMP0110	MMP1650	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Probable amino acid ABC transporter, periplasmic component.	0.922
MMP0110	afuB_1	MMP0110	MMP0109	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	ABC-type transporter permease protein.	0.989
MMP0110	modB	MMP0110	MMP0206	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Molybdenum ABC transporter, permease protein; Citation: Maupin-Furlow JA, et al. JBC 1995; 177(17): 4851-62 Wang SZ, et al. Biochem and Biophys Res Comm 1990; 169(3): 1122-1128.	0.889
MMP0110	modB-2	MMP0110	MMP0506	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Molybdenum transport system permease protein, modB RELATED; Citation: Self, W.T., et al. Res. Microbial. 2001(152): 311-321 Wang, SZ. et al. Biochem and Biophys Res Comm. 1990(169): 1122-1128.	0.970
MMP0208	MMP0110	MMP0208	MMP0110	Conserved hypothetical protein; Contains 4Fe-4S motif.	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	0.852
MMP0208	MMP0484	MMP0208	MMP0484	Conserved hypothetical protein; Contains 4Fe-4S motif.	Possible sodium/proton antiporter.	0.921
MMP0208	MMP0751	MMP0208	MMP0751	Conserved hypothetical protein; Contains 4Fe-4S motif.	Conserved hypothetical archaeal protein.	0.922
MMP0208	modB	MMP0208	MMP0206	Conserved hypothetical protein; Contains 4Fe-4S motif.	Molybdenum ABC transporter, permease protein; Citation: Maupin-Furlow JA, et al. JBC 1995; 177(17): 4851-62 Wang SZ, et al. Biochem and Biophys Res Comm 1990; 169(3): 1122-1128.	0.698
MMP0484	MMP0110	MMP0484	MMP0110	Possible sodium/proton antiporter.	ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	0.856
MMP0484	MMP0208	MMP0484	MMP0208	Possible sodium/proton antiporter.	Conserved hypothetical protein; Contains 4Fe-4S motif.	0.921
MMP0484	MMP0551	MMP0484	MMP0551	Possible sodium/proton antiporter.	Binding-protein-dependent transport systems inner membrane component.	0.502
MMP0484	MMP0751	MMP0484	MMP0751	Possible sodium/proton antiporter.	Conserved hypothetical archaeal protein.	0.928