Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0114Conserved hypothetical protein. (213 aa)    
Predicted Functional Partners:
MMP0113
Conserved hypothetical protein.
  
    0.941
mtbA
Uroporphyrinogen decarboxylase (URO-D).
  
    0.924
MMP0829
Coenzyme B12-binding:Cobalamin-dependent methionine synthase, B12-binding.
  
    0.922
MMP0832
Conserved Hypothetical Protein.
   
    0.857
MMP0833
Conserved hypothetical protein.
  
    0.850
MMP0112
2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2; Citation: FEBS Lett. 517:190-194(2002).
  
    0.770
MMP1539
Conserved hypothetical protein.
  
    0.741
MMP0111
Hypothetical.
  
    0.705
MMP0115
Conserved hypothetical protein.
  
  
 0.583
mtaA-2
Uroporphyrinogen decarboxylase (URO-D).
  
    0.572
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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