rpl39e protein (Methanococcus maripaludis S2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpl39e

LSU ribosomal protein L39E; Belongs to the eukaryotic ribosomal protein eL39 family. (51 aa)

Predicted Functional Partners:

rpl10

0.999

rps19e

0.998

rplA

0.996

rpsN

0.996

rpl24e

0.995

rpsL

0.992

rpl21e

0.991

rpl34e

0.991

rps17e

0.990

rpmC

0.990

Your Current Organism:

Methanococcus maripaludis S2

NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpl10	rpl21e	MMP0259	MMP0093	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
rpl10	rpl24e	MMP0259	MMP0639	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	LSU ribosomal protein L23E; Binds to the 23S rRNA.	0.999
rpl10	rpl34e	MMP0259	MMP0627	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family.	0.999
rpl10	rpl39e	MMP0259	MMP0159	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	LSU ribosomal protein L39E; Belongs to the eukaryotic ribosomal protein eL39 family.	0.999
rpl10	rplA	MMP0259	MMP0260	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	LSU ribosomal protein L1P; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	0.999
rpl10	rpmC	MMP0259	MMP1405	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.	0.999
rpl10	rps17e	MMP0259	MMP0577	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
rpl10	rps19e	MMP0259	MMP0156	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Ribosomal protein S19E (S16A); May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.999
rpl10	rpsL	MMP0259	MMP1367	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	SSU ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.	0.999
rpl10	rpsN	MMP0259	MMP1413	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.	0.999
rpl21e	rpl10	MMP0093	MMP0259	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.999
rpl21e	rpl24e	MMP0093	MMP0639	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	LSU ribosomal protein L23E; Binds to the 23S rRNA.	0.999
rpl21e	rpl34e	MMP0093	MMP0627	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	Ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family.	0.999
rpl21e	rpl39e	MMP0093	MMP0159	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	LSU ribosomal protein L39E; Belongs to the eukaryotic ribosomal protein eL39 family.	0.991
rpl21e	rplA	MMP0093	MMP0260	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	LSU ribosomal protein L1P; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	0.999
rpl21e	rpmC	MMP0093	MMP1405	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.	0.999
rpl21e	rps17e	MMP0093	MMP0577	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	30S ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
rpl21e	rps19e	MMP0093	MMP0156	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	Ribosomal protein S19E (S16A); May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.999
rpl21e	rpsL	MMP0093	MMP1367	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	SSU ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.	0.999
rpl21e	rpsN	MMP0093	MMP1413	Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.	0.999