Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MMP0223Conserved hypothetical protein. (92 aa)    
Predicted Functional Partners:
MMP0222
Conserved hypothetical archaeal protein.
  
    0.960
hemL
Glutamate-1-semialdehyde aminotransferase; Citation: Microbiology. 2002 Aug;148(Pt 8):2273-82; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.
  
    0.864
ppaC
Inorganic pyrophosphatase, manganese-dependent; Citation: Kuhn,N.J., Wadeson,A., Ward,S., Young,T.W., (2000) Arch. Biochem. Biophys. 379:292-298.
  
    0.825
putP
Sodium/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.601
MMP0546
Protein of unknown function DUF51.
       0.550
MMP1028
NFACT-R_1 domain-containing protein; Unnamed protein product.
       0.519
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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