Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0234Conserved hypothetical protein. (382 aa)    
Predicted Functional Partners:
MMP0235
Conserved hypothetical protein.
  
  
 0.985
MMP0236
Conserved hypothetical archaeal protein.
       0.938
MMP0233
Conserved hypothetical Archael protein.
     
 0.913
MMP0231
Conserved hypothetical protein.
  
  
 0.887
MMP0040
Type II secretion system protein; putative; subunit 1.
  
  
 0.865
MMP0038
Conserved hypothetical protein.
     
 0.861
MMP0241
Conserved hypothetical archaeal protein.
  
  
 0.835
MMP0240
Conserved hypothetical archaeal protein.
  
  
 0.834
MMP0239
Conserved hypothetical archaeal protein.
     
 0.824
MMP0238
Conserved hypothetical archaeal protein.
     
 0.823
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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