Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0235Conserved hypothetical protein. (297 aa)    
Predicted Functional Partners:
MMP0234
Conserved hypothetical protein.
  
  
 0.985
MMP0236
Conserved hypothetical archaeal protein.
  
  
 0.969
MMP0233
Conserved hypothetical Archael protein.
  
  
 0.967
MMP0231
Conserved hypothetical protein.
  
  
 0.966
MMP0238
Conserved hypothetical archaeal protein.
  
  
 0.893
MMP0232
Conserved Hypthetical Protein.
  
    0.888
MMP0237
Conserved hypothetical protein.
  
  
 0.885
MMP0241
Conserved hypothetical archaeal protein.
  
  
 0.848
MMP0240
Conserved hypothetical archaeal protein.
  
  
 0.845
MMP0239
Conserved hypothetical archaeal protein.
  
  
 0.838
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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