Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0241Conserved hypothetical archaeal protein. (587 aa)    
Predicted Functional Partners:
MMP0240
Conserved hypothetical archaeal protein.
  
  
 0.985
MMP0239
Conserved hypothetical archaeal protein.
  
  
 0.925
MMP0238
Conserved hypothetical archaeal protein.
  
  
 0.916
MMP0237
Conserved hypothetical protein.
  
    0.872
MMP0235
Conserved hypothetical protein.
  
  
 0.848
MMP0234
Conserved hypothetical protein.
  
  
 0.835
MMP0231
Conserved hypothetical protein.
  
  
 0.773
MMP0038
Conserved hypothetical protein.
  
  
 0.678
MMP0039
Conserved hypothetical protein.
  
  
 0.675
MMP0040
Type II secretion system protein; putative; subunit 1.
  
  
 0.673
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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