Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MMP0311Conserved hypothetical archaeal protein. (127 aa)    
Predicted Functional Partners:
MMP0312
Conserved hypothetical archaeal protein.
  
    0.992
MMP0313
Hypothetical protein: possibly conserved.
  
    0.880
trxB
Thioredoxin reductase.
  
    0.696
MMP0608
2-hydroxyglutaryl-CoA dehydratase (Component A) related protein; Citation: J Mol Biol 2001 Mar 16;307(1):297-308, Appl Microbiol Biotechnol. 2001 Oct;57(3):263-73.
  
    0.682
MMP0154
Conserved hypothetical archaeal protein; Belongs to the UPF0288 family.
       0.631
taw3
Conserved hypothetical protein; S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72; Belongs to the TYW3 family.
       0.615
MMP0692
Conserved hypothetical protein.
   
    0.609
MMP1635
Thioredoxin:Glutaredoxin:Thioredoxins/glutaredox in.
  
    0.597
MMP0656
Conserved hypothetical protein.
       0.431
MMP0337
Conserved hypothetical protein.
       0.428
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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