Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MMP0409Conserved hypothetical archaeal protein. (386 aa)    
Predicted Functional Partners:
MMP0276
Conserved hypothetical protein.
   
 0.773
MMP0673
TPR repeat.
   
 0.773
MMP0762
TPR repeat.
   
 0.773
MMP0873
TPR repeat.
   
 0.773
MMP0885
TPR repeat:ATP/GTP-binding site motif A (P-loop).
   
 0.773
MMP0895
TPR repeat.
   
 0.773
MMP1143
TPR repeat.
   
 0.773
MMP1223
Conserved hypothetical archaeal protein.
       0.724
gapN
Aldehyde dehydrogenase; Involved in F420 biosynthesis through the oxidation of lactaldehyde to lactate.
 
  
 0.706
ehbL
Ferredoxin; Citation: Tersteegen, A. and R. Hedderich. 1999. Eur. J. Biochem. 264:930-43.
 
   
 0.636
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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