Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0491MotA/TolQ/ExbB proton channel. (213 aa)    
Predicted Functional Partners:
MMP0492
Conserved hypothetical protein.
  
    0.961
MMP0493
Probable metal chelatase.
 
  
 0.958
MMP0490
Conserved hypothetical protein.
  
    0.910
MMP0567
Unnamed protein product.
 
  
 0.559
feoB
Ferrous iron transporter (GTP-binding).
  
  
 0.505
MMP0287
Conserved Hypothetical protein with 2 CBS domains.
 
  
 0.473
MMP1173
Conserved membrane protein.
  
  
 0.450
MMP0488
Low molecular weight phosphotyrosine protein phosphatase.
  
  
 0.440
MMP0699
C-5 cytosine-specific DNA methylase:Multi antimicrobial extrusion (MatE) protein.
  
  
 0.437
MMP0733
Putative membrane pump.
  
  
 0.430
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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