STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nth1Endonuclease III homologue; Citation: Nucleic Acids Res. (2001) 29: 604-613. (356 aa)    
Predicted Functional Partners:
exoA
Exonuclease III; Citation: J. Bact. (1982) 151: 351-357, PNAS (1986) 83: 7731-7735.
 
 0.998
nfo
Endonuclease IV; Citation: J. Bio. Chem. (2003) 278: 24563-24576.
  
 
 0.957
fen-1
Flap endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Act [...]
 
 
 0.857
MMP0931
Probable chemotaxis-related protein.
   
   0.809
MMP0932
Probable chemotaxis-related protein.
   
   0.809
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
 
  
 0.774
MMP0536
Conserved hypothetical protein.
  
    0.725
MMP0638
Conserved hypothetical protein.
  
 
 0.703
MMP1239
Conserved hypothetical protein.
 
    0.689
MMP1219
Putative dinG ATP-dependent helicase; Citation: J Biol Chem. 2003 279: 29294-28293.
  
  
 0.677
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.