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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP0550Similar to ABC-type amino acid transport system, periplasmic component. (264 aa)    
Predicted Functional Partners:
MMP0551
Binding-protein-dependent transport systems inner membrane component.
 0.999
MMP0229
ABC amino acid transport ATP binding protein.
 
 
 0.846
MMP1540
Conserved hypothetical Archael protein.
  
    0.795
MMP0712
Similar to amino acid ABC transporter substrate-binding protein.
  
     0.690
mtbC
Coenzyme B12-binding:Cobalamin-dependent methionine synthase, B12-binding.
  
    0.661
MMP0549
Conserved hypothetical protein.
 
     0.632
mtaA-2
Uroporphyrinogen decarboxylase (URO-D).
 
    0.565
MMP0552
Conserved hypothetical protein.
  
  
 0.559
MMP0931
Probable chemotaxis-related protein.
   
 
 0.548
MMP0932
Probable chemotaxis-related protein.
   
 
 0.548
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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