Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MMP0565Conserved hypothetical archaeal protein. (311 aa)    
Predicted Functional Partners:
MMP0564
Conserved hypothetical archaeal protein.
  
    0.866
MMP0566
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II related protein; Citation: Microbiology. 1997 Nov;143 (Pt 11):3443-50.
       0.691
MMP0567
Unnamed protein product.
       0.645
MMP0549
Conserved hypothetical protein.
       0.616
MMP1282
Conseved hypothetical protein NTP-binding; Belongs to the UPF0200 family.
       0.616
MMP0568
Transcriptional regulator related protein.
       0.596
MMP0769
Conserved hypothetical archaeal protein.
   
    0.584
MMP0563
Conserved hypothetical archaeal protein.
       0.564
MMP0552
Conserved hypothetical protein.
   
    0.492
MMP1655
Conserved hypothetical protein.
   
    0.444
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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