Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0628Probable Molybdenum-pterin binding protein. (68 aa)    
Predicted Functional Partners:
MMP1329
Ferredoxin; Contains a 4Fe-4S binding domain.
  
    0.893
MMP0912
Tautomerase related protein.
   
    0.737
MMP0931
Probable chemotaxis-related protein.
    
   0.578
MMP0932
Probable chemotaxis-related protein.
    
   0.578
MMP0629
Conserved hypothetical archaeal protein.
  
    0.520
afuB_1
ABC-type transporter permease protein.
       0.465
MMP1164
Heavy-metal transport ATPase related protein.
   
    0.455
MMP1198
Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.
  
  
 0.407
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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