Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MMP0005 | MMP0649 | MMP0005 | MMP0649 | Hypothetical protein. | Carbamoyltransferase. | 0.855 |
MMP0005 | MMP1087 | MMP0005 | MMP1087 | Hypothetical protein. | Hypothetical protein. | 0.605 |
MMP0005 | MMP1600 | MMP0005 | MMP1600 | Hypothetical protein. | Ribosomal protein S6 modification enzyme (glutaminyl transferase) related; Citation: Mol Gen Genet. 1989 Jun;217(2-3):281-8. | 0.433 |
MMP0647 | MMP0649 | MMP0647 | MMP0649 | ATP/GTP-binding site motif A (P-loop):Protein of unknown function DUF101; Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently. | Carbamoyltransferase. | 0.789 |
MMP0647 | ilvB | MMP0647 | MMP0650 | ATP/GTP-binding site motif A (P-loop):Protein of unknown function DUF101; Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently. | Acetohydroxyacid synthase large subunit; Citation: Genetics 152:1439. | 0.530 |
MMP0647 | ilvN | MMP0647 | MMP0651 | ATP/GTP-binding site motif A (P-loop):Protein of unknown function DUF101; Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently. | Acetohydroxyacid synthase small subunit. | 0.511 |
MMP0647 | rtcA | MMP0647 | MMP0648 | ATP/GTP-binding site motif A (P-loop):Protein of unknown function DUF101; Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.984 |
MMP0649 | MMP0005 | MMP0649 | MMP0005 | Carbamoyltransferase. | Hypothetical protein. | 0.855 |
MMP0649 | MMP0647 | MMP0649 | MMP0647 | Carbamoyltransferase. | ATP/GTP-binding site motif A (P-loop):Protein of unknown function DUF101; Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently. | 0.789 |
MMP0649 | MMP1086 | MMP0649 | MMP1086 | Carbamoyltransferase. | Conserved hypothetical protein. | 0.427 |
MMP0649 | MMP1087 | MMP0649 | MMP1087 | Carbamoyltransferase. | Hypothetical protein. | 0.614 |
MMP0649 | MMP1090 | MMP0649 | MMP1090 | Carbamoyltransferase. | UDP-glucose 4-epimerase related. | 0.451 |
MMP0649 | MMP1600 | MMP0649 | MMP1600 | Carbamoyltransferase. | Ribosomal protein S6 modification enzyme (glutaminyl transferase) related; Citation: Mol Gen Genet. 1989 Jun;217(2-3):281-8. | 0.476 |
MMP0649 | ilvB | MMP0649 | MMP0650 | Carbamoyltransferase. | Acetohydroxyacid synthase large subunit; Citation: Genetics 152:1439. | 0.533 |
MMP0649 | ilvN | MMP0649 | MMP0651 | Carbamoyltransferase. | Acetohydroxyacid synthase small subunit. | 0.537 |
MMP0649 | proS | MMP0649 | MMP0696 | Carbamoyltransferase. | Prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). | 0.455 |
MMP0649 | rtcA | MMP0649 | MMP0648 | Carbamoyltransferase. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.790 |
MMP1086 | MMP0649 | MMP1086 | MMP0649 | Conserved hypothetical protein. | Carbamoyltransferase. | 0.427 |
MMP1086 | MMP1087 | MMP1086 | MMP1087 | Conserved hypothetical protein. | Hypothetical protein. | 0.831 |
MMP1087 | MMP0005 | MMP1087 | MMP0005 | Hypothetical protein. | Hypothetical protein. | 0.605 |
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