Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0692Conserved hypothetical protein. (319 aa)    
Predicted Functional Partners:
MMP0709
Hypothetical protein.
   
    0.676
MMP0693
Aminoacyl-tRNA synthetase, class II.
  
   
0.618
MMP0311
Conserved hypothetical archaeal protein.
   
    0.609
MMP0691
Conserved hypothetical archaeal protein.
  
    0.597
MMP0690
Polyferredoxin.
       0.548
MMP0961
Conserved hypothetical protein.
   
  
 0.546
MMP0312
Conserved hypothetical archaeal protein.
   
    0.466
rbo
Desulfoferrodoxin, ferrous iron-binding site.
  
  
 0.436
MMP0694
Beta-lactamase-like:KH domain.
       0.427
MMP0559
Family of unknown function ThiJ/PfpI.
  
    0.421
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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