Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0709Hypothetical protein. (198 aa)    
Predicted Functional Partners:
MMP0600
Hypothetical protein.
   
  
 0.795
MMP0528
Hypothetical protein.
   
  
 0.794
MMP0601
Hypothetical protein.
   
  
 0.793
MMP0903
Hypothetical protein.
   
  
 0.793
MMP1283
Conserved hypothetical archaeal protein.
   
  
 0.790
MMP0692
Conserved hypothetical protein.
   
    0.676
MMP1685
Conserved hypothetical protein.
   
  
 0.661
MMP0703
Conserved hypothetical protein.
      
 0.634
nadE
NAD+ synthase related protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
      
 0.633
MMP0710
Cation-transporting ATPase.
  
    0.513
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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