Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0781Conserved hypothetical archaeal protein. (646 aa)    
Predicted Functional Partners:
MMP0780
Conserved hypothetical protein.
  
    0.972
MMP0782
Conserved hypothetical protein.
  
    0.836
MMP0775
Hypothetical protein.
  
    0.797
MMP0778
Hypothetical protein.
  
    0.791
MMP0774
Hypothetical protein.
  
    0.749
MMP0779
Conserved hypothetical protein.
  
    0.676
MMP0772
Hypothetical protein.
  
    0.596
MMP0773
Conserved hypothetical archaeal protein.
  
    0.587
MMP0776
Conserved hypothetical archaeal protein.
  
    0.582
MMP0777
Hypothetical protein.
  
    0.511
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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