Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0784Conserved hypothetical protein. (136 aa)    
Predicted Functional Partners:
MMP0783
Conserved hypothetical protein.
 
    0.984
MMP0475
Hypothetical protein.
   
    0.721
MMP1252
CBS domain.
       0.616
hom
Homoserine dehydrogenase; Citation: Marchenko GN, Marchenko ND, Tsygankov YD, Chistoserdov AY. (1999)Microbiology 145:3273-82.
       0.616
MMP0896
Polysaccharide biosynthesis protein.
   
    0.609
dop
Chymotrypsin serine protease, family S1.
  
    0.559
MMP0758
HNH endonuclease:HNH nuclease.
   
    0.537
MMP0794
Hypothetical protein.
  
    0.456
MMP0769
Conserved hypothetical archaeal protein.
   
    0.434
MMP1110
Protein of unknown function DUF70.
   
    0.426
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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