Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0797General substrate transporter. (401 aa)    
Predicted Functional Partners:
MMP0796
Probable sugar efflux transporter.
 
    0.871
MMP0805
Predicted protein.
  
    0.651
MMP0801
Unnamed protein product.
  
    0.499
MMP0806
Conserved hypothetical protein.
  
    0.498
MMP0795
Possible predicted protein.
  
    0.467
MMP0794
Hypothetical protein.
  
  
 0.456
MMP1173
Conserved membrane protein.
  
  
 0.449
MMP0551
Binding-protein-dependent transport systems inner membrane component.
  
  
 0.439
MMP0800
Conserved hypothetical Archael protein.
  
    0.438
lig
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
  
 0.434
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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