Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0800Conserved hypothetical Archael protein. (360 aa)    
Predicted Functional Partners:
MMP0801
Unnamed protein product.
    0.995
MMP0769
Conserved hypothetical archaeal protein.
   
    0.921
MMP0896
Polysaccharide biosynthesis protein.
  
    0.919
MMP0796
Probable sugar efflux transporter.
  
    0.900
MMP0806
Conserved hypothetical protein.
 
    0.882
MMP0805
Predicted protein.
 
  
 0.793
MMP1650
Probable amino acid ABC transporter, periplasmic component.
  
    0.786
MMP0475
Hypothetical protein.
   
    0.771
MMP0793
Possible predicted protein.
  
    0.742
MMP0802
Iron-containing alcohol dehydrogenase.
  
    0.677
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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