Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0804Hypothetical protein. (171 aa)    
Predicted Functional Partners:
MMP0685
SAM (and some other nucleotide) binding motif:N-6 Adenine-specific DNA methylase.
   
    0.737
MMP0802
Iron-containing alcohol dehydrogenase.
  
    0.701
MMP0803
Conserved archaeal protein.
  
    0.699
MMP0501
Hypothetical protein.
   
    0.630
MMP0538
Hypothetical protein.
   
    0.605
resP
Site-specific recombinase.
   
    0.605
MMP0805
Predicted protein.
  
    0.551
MMP0806
Conserved hypothetical protein.
  
    0.547
MMP0484
Possible sodium/proton antiporter.
   
    0.481
MMP0751
Conserved hypothetical archaeal protein.
   
    0.477
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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