Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mtbA-2Uroporphyrinogen decarboxylase (URO-D). (287 aa)    
Predicted Functional Partners:
MMP0973
Hypothetical membrane spanning protein.
  
    0.934
mtaA-2
Uroporphyrinogen decarboxylase (URO-D).
 
  
 0.912
MMP0833
Conserved hypothetical protein.
  
 0.910
MMP0832
Conserved Hypothetical Protein.
 
  
 0.873
MMP0552
Conserved hypothetical protein.
  
  
 0.865
MMP0484
Possible sodium/proton antiporter.
  
    0.859
MMP1620
Hypothetical.
   
    0.851
MMP0110
ABC transporter:AAA ATPase; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.
   
    0.812
hemC
Porphobilinogen deaminase; Citation: Microbiology. 2002 Aug;148(Pt 8):2273-82.
  
 
 0.774
MMP0768
Conserved Hypothetical Protein.
  
  
 0.740
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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