Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MMP0622 | NifI1 | MMP0622 | MMP0854 | ADP-ribosylglycohydrolase (draG) homolog. | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | 0.867 |
MMP0622 | nifI2 | MMP0622 | MMP0855 | ADP-ribosylglycohydrolase (draG) homolog. | Nitrogen regulatory protein NifI2; Could be involved in the regulation of nitrogen fixation. | 0.867 |
NifI1 | MMP0622 | MMP0854 | MMP0622 | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | ADP-ribosylglycohydrolase (draG) homolog. | 0.867 |
NifI1 | amtB | MMP0854 | MMP0065 | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | Ammonia transporter. | 0.989 |
NifI1 | amtB-2 | MMP0854 | MMP0068 | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | Ammonia transporter. | 0.982 |
NifI1 | argB | MMP0854 | MMP0063 | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.875 |
NifI1 | nifD | MMP0854 | MMP0856 | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | Oxidoreductase, nitrogenase component 1; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation. | 0.998 |
NifI1 | nifE | MMP0854 | MMP0858 | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | Nitrogenase iron-molybdenum cofactor biosynthesis protein; This protein may play a role in the biosynthesis of the prosthetic group of nitrogenase (FeMo cofactor); Belongs to the NifD/NifK/NifE/NifN family. | 0.996 |
NifI1 | nifH | MMP0854 | MMP0853 | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | Nitrogenase iron protein (nitrogenase component II); The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.998 |
NifI1 | nifI2 | MMP0854 | MMP0855 | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | Nitrogen regulatory protein NifI2; Could be involved in the regulation of nitrogen fixation. | 0.987 |
NifI1 | nifK | MMP0854 | MMP0857 | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | Oxidoreductase, nitrogenase component 1; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. | 0.998 |
NifI1 | nifN | MMP0854 | MMP0859 | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | Iron-molybdenum cofactor biosynthesis protein, subunit N; Citation: Kessler et al. 1998 J Bacteriol 180:1504-1511. | 0.998 |
amtB | NifI1 | MMP0065 | MMP0854 | Ammonia transporter. | Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation. | 0.989 |
amtB | argB | MMP0065 | MMP0063 | Ammonia transporter. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.485 |
amtB | nifD | MMP0065 | MMP0856 | Ammonia transporter. | Oxidoreductase, nitrogenase component 1; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation. | 0.670 |
amtB | nifE | MMP0065 | MMP0858 | Ammonia transporter. | Nitrogenase iron-molybdenum cofactor biosynthesis protein; This protein may play a role in the biosynthesis of the prosthetic group of nitrogenase (FeMo cofactor); Belongs to the NifD/NifK/NifE/NifN family. | 0.568 |
amtB | nifH | MMP0065 | MMP0853 | Ammonia transporter. | Nitrogenase iron protein (nitrogenase component II); The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.764 |
amtB | nifI2 | MMP0065 | MMP0855 | Ammonia transporter. | Nitrogen regulatory protein NifI2; Could be involved in the regulation of nitrogen fixation. | 0.975 |
amtB | nifK | MMP0065 | MMP0857 | Ammonia transporter. | Oxidoreductase, nitrogenase component 1; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. | 0.672 |
amtB | nifN | MMP0065 | MMP0859 | Ammonia transporter. | Iron-molybdenum cofactor biosynthesis protein, subunit N; Citation: Kessler et al. 1998 J Bacteriol 180:1504-1511. | 0.565 |
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