Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP0997Blue (type 1) copper domain. (118 aa)    
Predicted Functional Partners:
MMP0996
Hypothetical protein.
  
    0.785
MMP0194
Conserved hypothetical protein.
   
    0.655
MMP0115
Conserved hypothetical protein.
  
  
 0.635
MMP0533
Conserved hypothetical Archael protein.
   
    0.605
MMP0851
Conserved hypothetical protein.
   
    0.604
MMP0294
Bacterial quinoprotein.
  
    0.546
MMP0852
Conserved hypothetical protein.
  
  
 0.517
MMP0998
Hypothetical protein.
  
    0.454
MMP0493
Probable metal chelatase.
 
  
 0.453
MMP0710
Cation-transporting ATPase.
  
  
 0.436
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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