Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MMP1062Conserved hypothetical protein; Belongs to the peptidase S16 family. (613 aa)    
Predicted Functional Partners:
MMP1061
Protein of unknown function UPF0029.
  
    0.768
cysS
Cysteinyl-tRNA synthetase.
  
    0.737
MMP1059
Conserved hypothetical protein.
 
     0.705
MMP0585
Universal stress protein (Usp).
       0.616
leuA
2-isopropylmalate synthase; Citation: J. Bac. 176(15): 4590-6 [M. thermoautotrophicum] Porat. I. and Whitman, W.B. Unpublished deletion mutant; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.561
MMP1021
Conserved hypothetical protein.
 
    0.545
MMP1516
Conserved hypothetical archaeal protein; Citation: Mol. Microbiol. (2002) 45: 59-71.
 
    0.527
MMP0199
Conserved hypothetical archaeal protein.
  
    0.519
MMP0375
Conserved hypothetical protein.
  
    0.481
MMP1058
Conserved hypothetical archeal protein.
  
    0.459
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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