STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtaA-2Uroporphyrinogen decarboxylase (URO-D). (352 aa)    
Predicted Functional Partners:
mtbC
Coenzyme B12-binding:Cobalamin-dependent methionine synthase, B12-binding.
  
 0.995
MMP0829
Coenzyme B12-binding:Cobalamin-dependent methionine synthase, B12-binding.
  
 0.980
mtaA
Uroporphyrinogen decarboxylase (URO-D).
  
 
 
0.940
hemD
Uroporphyrinogen III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
 
 0.928
cobA
uroporphyrin-III C-methyltransferase; Citation: J Bacteriol. 1991 Aug;173(15):4637-45; Belongs to the precorrin methyltransferase family.
    
 0.925
mtbA-2
Uroporphyrinogen decarboxylase (URO-D).
 
  
 0.899
mtbA
Uroporphyrinogen decarboxylase (URO-D).
 
  
0.830
MMP0832
Conserved Hypothetical Protein.
 
  
 0.741
hemC
Porphobilinogen deaminase; Citation: Microbiology. 2002 Aug;148(Pt 8):2273-82.
 
 
 0.733
MMP0768
Conserved Hypothetical Protein.
  
  
 0.717
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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