Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MMP1232Conserved hypothetical protein. (296 aa)    
Predicted Functional Partners:
MMP1312
Conserved hypothetical protein.
       0.827
MMP1234
Conserved hypothetical membrane related protein.
  
 
 0.786
feoB
Ferrous iron transporter (GTP-binding).
     
 0.702
MMP1541
Conserved hypothetical archaeal protein.
       0.689
bioB-2
TonB-dependent receptor protein:Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.684
MMP1233
TonB-dependent receptor protein:Formate dehydrogenase, subunit FdhD.
  
    0.679
MMP0685
SAM (and some other nucleotide) binding motif:N-6 Adenine-specific DNA methylase.
  
  
 0.664
MMP0173
Conserved hypothetical protein.
  
  
 0.645
MMP1236
Conserved hypothetical protein; Belongs to the UPF0280 family.
  
    0.610
MMP1010
Pseudouridine synthase:Pseudouridine synthase, Rlu. Related protein.
  
 
 0.576
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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