MMP1260 protein (Methanococcus maripaludis S2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MMP1260

Conserved hypothetical Archael protein. (382 aa)

Predicted Functional Partners:

MMP1197

0.999

MMP1198

0.999

glnK1

0.681

glnB

0.681

glnK2

0.681

NifI1

0.681

nifI2

0.681

MMP1499

0.630

mer

0.622

MMP1261

0.564

Your Current Organism:

Methanococcus maripaludis S2

NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMP1197	MMP1198	MMP1197	MMP1198	Transport permease protein.	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	0.999
MMP1197	MMP1260	MMP1197	MMP1260	Transport permease protein.	Conserved hypothetical Archael protein.	0.999
MMP1197	MMP1499	MMP1197	MMP1499	Transport permease protein.	Conserved hypothetical archaeal protein.	0.663
MMP1197	NifI1	MMP1197	MMP0854	Transport permease protein.	Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation.	0.604
MMP1197	glnB	MMP1197	MMP0066	Transport permease protein.	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.	0.604
MMP1197	glnK1	MMP1197	MMP0064	Transport permease protein.	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.	0.604
MMP1197	glnK2	MMP1197	MMP0067	Transport permease protein.	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.	0.604
MMP1197	mer	MMP1197	MMP0058	Transport permease protein.	Coenzyme F420-dependent N5,N10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.	0.878
MMP1197	nifI2	MMP1197	MMP0855	Transport permease protein.	Nitrogen regulatory protein NifI2; Could be involved in the regulation of nitrogen fixation.	0.604
MMP1198	MMP1197	MMP1198	MMP1197	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Transport permease protein.	0.999
MMP1198	MMP1260	MMP1198	MMP1260	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Conserved hypothetical Archael protein.	0.999
MMP1198	MMP1499	MMP1198	MMP1499	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Conserved hypothetical archaeal protein.	0.643
MMP1198	NifI1	MMP1198	MMP0854	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Nitrogen regulatory protein NifI1; Could be involved in the regulation of nitrogen fixation.	0.630
MMP1198	glnB	MMP1198	MMP0066	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.	0.630
MMP1198	glnK1	MMP1198	MMP0064	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.	0.630
MMP1198	glnK2	MMP1198	MMP0067	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.	0.630
MMP1198	mer	MMP1198	MMP0058	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Coenzyme F420-dependent N5,N10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.	0.644
MMP1198	nifI2	MMP1198	MMP0855	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	Nitrogen regulatory protein NifI2; Could be involved in the regulation of nitrogen fixation.	0.630
MMP1260	MMP1197	MMP1260	MMP1197	Conserved hypothetical Archael protein.	Transport permease protein.	0.999
MMP1260	MMP1198	MMP1260	MMP1198	Conserved hypothetical Archael protein.	Nitrate/sulfonate/bicarbonate ABC transporter ATPase subunit; Citation: Galagan, J.E. et al. Genome Res.12:532-542,2002.	0.999