Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
MMP1329Ferredoxin; Contains a 4Fe-4S binding domain. (62 aa)    
Predicted Functional Partners:
MMP0628
Probable Molybdenum-pterin binding protein.
  
    0.893
rpoK
DNA-directed RNA polymerase, subunit K.
       0.717
frdA
Fumarate reductase/succinate dehydrogenase, flavoprotein subunit.
  
 
 0.706
MMP1328
Enolase.
     
 0.666
fdxA
Ferredoxin.
  
  
 0.490
MMP0908
CBS domain.
 
  
 0.462
ehbO
Energy conserving hydrogenase B integral membrane subunit; Citation: Tersteegen, A. and R. Hedderich. 1999. Eur. J. Biochem. 264:930-43.
 
   
 0.457
MMP1164
Heavy-metal transport ATPase related protein.
  
    0.455
MMP0974
Hypothetical protein.
 
 
 0.448
MMP0409
Conserved hypothetical archaeal protein.
 
     0.442
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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