Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MMP1517Conserved hypothetical protein. (200 aa)    
Predicted Functional Partners:
MMP1516
Conserved hypothetical archaeal protein; Citation: Mol. Microbiol. (2002) 45: 59-71.
  
    0.797
MMP0277
TraB family.
       0.689
rnz
Conserved hypothetical protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.689
purM-2
AIR synthase related protein:Phosphoribosylformylglycinamidine cyclo-ligase.
       0.687
MMP0453
Neutral zinc metallopeptidases, zinc-binding region:CBS domain.
 
  
 0.680
MMP1056
Conserved hypothetical protein.
 
    0.573
MMP1534
Conserved hypothetical protein.
 
     0.564
MMP1518
Sulfate/molybdate ABC-transporter homolog, ATPase subunit.
  
    0.548
MMP1519
Anion transport system permease protein.
  
    0.534
MMP0287
Conserved Hypothetical protein with 2 CBS domains.
 
  
 0.515
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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