Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MMP1522Conserved hypothetical archaeal protein. (340 aa)    
Predicted Functional Partners:
MMP1521
Conserved hypothetical archaeal protein.
  
    0.818
secD
SecD/SecF/SecDF export membrane protein; Involved in protein export.
 
    0.760
secF
SecD/SecF/SecDF export membrane protein; Involved in protein export.
 
    0.683
MMP0769
Conserved hypothetical archaeal protein.
  
  
 0.520
rncS
Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain.
  
    0.507
MMP0812
Conserved hypothetical protein.
   
    0.477
MMP0896
Polysaccharide biosynthesis protein.
 
  
 0.455
glmS
Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
  
 0.447
MMP0768
Conserved Hypothetical Protein.
  
    0.444
MMP1525
Modulator of DNA gyrase.
       0.439
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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