Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MMP1538Predicted transporter component. (156 aa)    
Predicted Functional Partners:
MMP1537
Cytochrome c heme-binding site.
 
    0.998
MMP1539
Conserved hypothetical protein.
 
    0.927
MMP1540
Conserved hypothetical Archael protein.
 
    0.886
MMP0308
Conserved hypothetical archaeal protein.
  
  
 0.705
MMP0309
Intracellular sulfur reduction related protein.
 
    0.544
MMP1712
Transcriptional regulator, LysR Family Member.
 
     0.486
MMP0346
2-hydroxyglutaryl-CoA dehydratase (Component D) related protein; Citation: J Mol Biol 2001 Mar 16;307(1):297-308, Appl Microbiol Biotechnol. 2001 Oct;57(3):263-73.
 
    0.479
modA-4
Possible molybdenum ABC transporter, solute-binding protein.
  
    0.466
MMP1535
Conserved hypothetical archaeal protein.
       0.463
MMP1536
Conserved hypothetical archaeal protein.
       0.463
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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