Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MMP1540Conserved hypothetical Archael protein. (273 aa)    
Predicted Functional Partners:
MMP1539
Conserved hypothetical protein.
 
    0.997
MMP1537
Cytochrome c heme-binding site.
 
    0.912
MMP1538
Predicted transporter component.
 
    0.886
MMP0550
Similar to ABC-type amino acid transport system, periplasmic component.
  
  
 0.795
tgtA
tRNA-guanine(15) transglycosylase; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
       0.717
MMP0829
Coenzyme B12-binding:Cobalamin-dependent methionine synthase, B12-binding.
   
    0.484
frcD
Coenzyme F420-reducing hydrogenase subunit delta; Cytoplasmic, selenium independent; Citation: Muth, E. et al. 1987. Eur. J. Biochem. 169:571-7. Rossmann, R. et al. 1995. Eur. J. Biochem. 227:545-50. Halboth,S., Klein,A.
  
    0.470
mtaA-2
Uroporphyrinogen decarboxylase (URO-D).
   
  
 0.459
hsp60
Chaperonin GroEL (thermosome, HSP60 family); Belongs to the TCP-1 chaperonin family.
  
  
 0.445
MMP1712
Transcriptional regulator, LysR Family Member.
 
     0.436
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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