Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP1572Hypothetical protein. (98 aa)    
Predicted Functional Partners:
MMP1620
Hypothetical.
   
    0.925
MMP0484
Possible sodium/proton antiporter.
   
    0.923
MMP0461
Hypothetical.
   
    0.919
MMP0424
Hypothetical.
   
    0.917
MMP1655
Conserved hypothetical protein.
   
    0.896
MMP0751
Conserved hypothetical archaeal protein.
   
    0.886
MMP0731
Exonuclease VII, small subunit related protein.
   
    0.878
MMP0662
Hypothetical protein.
   
    0.876
MMP0782
Conserved hypothetical protein.
   
    0.869
MMP0786
Hypothetical protein.
   
    0.863
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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