Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP1684Conserved hypothetical protein. (227 aa)    
Predicted Functional Partners:
MMP1685
Conserved hypothetical protein.
  
    0.753
MMP1534
Conserved hypothetical protein.
 
    0.744
MMP1568
Conserved hypothetical archaeal protein.
       0.648
MMP0623
Protein of unknown function DUF124.
       0.636
trpG
Anthranilate synthase component II; Citation: Knochel T, Ivens A, Hester G, Gonzalez A, Bauerle R, Wilmanns M, Kirschner K, Jansonius JN.(1999). Proc Natl Acad Sci. 96:9479-.
       0.634
rps8e
SSU ribosomal protein S8E.
 
     0.530
MMP1569
Conserved hypothetical archaeal protein.
       0.456
MMP1188
Conserved hypothetical archaeal protein; Belongs to the UPF0147 family.
 
     0.404
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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