STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0015Hypothetical extradiol ring-cleavage dioxygenase related protein. (296 aa)    
Predicted Functional Partners:
RSc0541
Probable pirin-like protein; Belongs to the pirin family.
 
  
 0.710
RSp0444
Putative pirin-like protein; Belongs to the pirin family.
 
  
 0.700
RSc0377
Putative pirin-related protein; Belongs to the pirin family.
 
  
 0.673
RSc2208
Probable pirin-related protein; Belongs to the pirin family.
 
  
 0.669
gor
Probable glutathione reductase oxidoreductase protein.
       0.484
RSp0891
Putative hydratase/decarboxylase; protein.
  
  
 0.429
RSp0892
Putative hydratase/decarboxylase; protein.
  
  
 0.429
RSp0899
Probable hydratase/decarboxylase; protein.
  
  
 0.429
ribAB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.424
hpaF
Putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase protein.
  
  
 0.420
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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