STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0045Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (424 aa)    
Predicted Functional Partners:
dksA
Putative dnak suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.794
map
Probable methionine aminopeptidase protein; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.700
rpsN
Probable 30s ribosomal protein s14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.695
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.643
cbiJH
Probable bifunctional: precorrin-3 methyltransferase and precorrin-6x reductase oxidoreductase protein.
     
 0.557
rpmB
Probable 50s ribosomal protein l28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.548
RSc0044
Probable substrate-binding periplasmic (pbp) abc transporter protein.
     
 0.536
rpmG
Probable 50s ribosomal protein l33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.529
cobH
Putative precorrin isomerase transmembrane protein.
     
 0.498
RSc0023
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
  
 0.479
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.