STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0047Putative cobalamin synthesis protein. (362 aa)    
Predicted Functional Partners:
RSc0048
Putative transcription regulator protein; Belongs to the Fur family.
     
 0.794
rpsN
Probable 30s ribosomal protein s14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.686
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.576
map
Probable methionine aminopeptidase protein; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.547
RSc0049
Probable 3-carboxymuconate cyclase protein.
       0.543
RSc0050
Putative fad linked oxidase oxidoreductase protein.
       0.533
rpmB
Probable 50s ribosomal protein l28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.514
cbiJH
Probable bifunctional: precorrin-3 methyltransferase and precorrin-6x reductase oxidoreductase protein.
     
 0.497
cobH
Putative precorrin isomerase transmembrane protein.
     
 0.496
rpmG
Probable 50s ribosomal protein l33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.486
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.