STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0049Probable 3-carboxymuconate cyclase protein. (418 aa)    
Predicted Functional Partners:
RSc0050
Putative fad linked oxidase oxidoreductase protein.
 
     0.878
RSp0824
Putative gluconolactonase (d-glucono-delta-lactone lactonohydrolase) protein.
  
  
 0.652
RSc0048
Putative transcription regulator protein; Belongs to the Fur family.
 
     0.604
RSc0047
Putative cobalamin synthesis protein.
       0.543
RSc0051
Putative predicted sam-dependent methyltransferase protein.
       0.471
RSp1061
Putative glucose-fructose oxidoreductase; oxidoreductase protein.
  
     0.412
xerC1
Probable tyrosine recombinase xerc 1 protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (By similarity).
       0.405
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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