STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0055Signal peptide protein; Putative dienelactone hydrolase and related enzymes / esterase/lipase/thioesterase;lipase, active site; signal peptide protein. (325 aa)    
Predicted Functional Partners:
RSc0056
Probable lipoprotein.
       0.773
RSp0611
Probable transmembrane protein.
  
   
 0.739
RSc0268
Putative dienelactone hydrolase and related enzymes signal peptide protein.
  
     0.727
RSc3285
Probable abc-type branched-chain amino acid transport systems, periplasmic component signal peptide protein.
  
     0.675
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
      
 0.664
gatA
Probable glutamyl-trna(gln) amidotransferase subunit a (glu-adtsubunit a) protein; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
  
  
 0.652
RSc1602
Putative peptidase t1a, proteasome beta-subunit; protein.
  
    0.647
RSc0310
Putative signal peptide protein.
  
     0.600
RSp1096
Putative transcription regulator protein.
  
     0.593
RSc0485
Probable glutamine amidotransferase, class-II; protein.
      
 0.550
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.