STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mreCProbable rod shape-determining mrec transmembrane protein. (346 aa)    
Predicted Functional Partners:
mreB
Probable rod shape-determining protein.
 
 0.997
mreD
Probable rod shape-determining mred transmembrane protein.
 
 
 0.997
mrdA
Probable substrate-binding transmembrane protein; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
 
 0.982
mdrB
Probable rod shape-determining (roda protein) transmembrane; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.981
minC
Probable septum site-determining protein minc; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization.; Belongs to the MinC family.
  
  
 0.865
ftsI
Probable penicillin-binding 3 precursor pbp-3 transmembrane protein; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.
 
 
 0.782
minD
Probable septum site-determining protein mind.
  
    0.739
radC
Probable dna repair protein radc homolog; Belongs to the UPF0758 family.
  
  
 0.738
radC2
Probable dna repair radc-like protein; Belongs to the UPF0758 family.
  
  
 0.738
rpiA
Probable ribose-5-phosphate isomerase a (phosphoriboisomerase a)(pri) protein; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
 0.718
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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