STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
mrdAProbable substrate-binding transmembrane protein; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (801 aa)    
Predicted Functional Partners:
mdrB
Probable rod shape-determining (roda protein) transmembrane; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.998
dac
Probable penicillin-binding (d-alanyl-d-alanine carboxypeptidase) transmembrane protein; Belongs to the peptidase S11 family.
 
 
 0.985
mreC
Probable rod shape-determining mrec transmembrane protein.
 
 
 0.982
mrcA
Probable penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein.
 
 
 0.980
mtgA
Biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
 
 
 0.979
ftsW
Probable cell division ftsw transmembrane protein; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.
 
 0.961
mreB
Probable rod shape-determining protein.
 
 
 0.953
ftsI
Probable penicillin-binding 3 precursor pbp-3 transmembrane protein; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.
  
  
0.951
RSc0584
Probable d-alanyl-d-alanine carboxypeptidase signal peptide protein.
  
  
 0.929
mreD
Probable rod shape-determining mred transmembrane protein.
 
  
 0.910
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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