STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0078Probable two component response regulator transcription regulator protein. (239 aa)    
Predicted Functional Partners:
RSc0077
Probable two component sensor histidine kinase transcription regulator protein.
 
 0.996
RSc0076
Probable proline rich signal peptide protein.
 
     0.936
lpxC
UDP-3-O-acyl-N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
    
 0.902
RSc0543
Probable response regulator transcription regulator protein.
  
 
   0.728
ntrB
Probable nitrogen regulation (sensor protein kinase) transcription regulator.
 
 
 0.720
RSc1073
Probable two-component system response regulator transcription regulator protein.
  
 
   0.716
RSp1441
Probable two-component sensor kinase transcription regulator protein.
  
 
 
 0.694
rrmB
Putative rna methyltransferase (sun protein); Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.690
RSc3392
Probable response regulator transcription regulator protein.
  
 
   0.686
RSc1181
Probable cog1807, 4-amino-4-deoxy-l-arabinose transferase and related glycosyltransferases of pmt family transmembrane protein.
  
     0.665
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.