STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0079Probable transmembrane protein. (795 aa)    
Predicted Functional Partners:
atpE
Probable atp synthase c chain (lipid-binding) transmembrane protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.991
RSc0131
Probable lipoprotein.
    
   0.501
RSc3142
Putative transport transmembrane protein.
    
   0.501
RSp1005
Probable transmembrane protein.
    
   0.501
RSp1228
Putative signal peptide protein.
    
   0.501
RSc0835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    
 0.460
RSc3235
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    
 0.460
RSc0080
Probable transmembrane protein.
       0.426
RSc2771
Putative pseudogene (cation efflux protein c-terminal fragment).
    
   0.405
RSc2772
Putative metal transport transmembrane protein.
    
   0.405
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.