STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0083Hypothetical protein of unknown function duf849, prokaryotic. (281 aa)    
Predicted Functional Partners:
RSc0082
Putative aminotransferase class-III; protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.856
RSc0081
Putative transcriptional regulator transcription regulator protein.
 
     0.800
kynB
Probable kynurenine formidase protein; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
  
  
 0.688
RSc1835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
  
 0.660
RSc1159
Putative transcription regulator protein.
  
    0.618
RSc2672
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.613
RSc0084
Probable amino-acid-binding periplasmic (pbp) abc transporter protein.
       0.561
RSc0474
Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
  
  
 0.435
RSc1759
3-hydroxyacyl-CoA dehydrogenase; Probable trifunctonal: enoyl-coa hydratase and delta3-cis-delta2-trans-enoyl-coa isomerase and 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
  
  
 0.435
RSc1607
Probable transmembrane protein.
  
     0.404
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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