STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0084Probable amino-acid-binding periplasmic (pbp) abc transporter protein. (301 aa)    
Predicted Functional Partners:
gltJ
Probable glutamate/aspartate transmembrane abc transporter protein.
 0.968
gltK
Probable glutamate/aspartate transmembrane abc transporter protein.
 
 0.963
gltL
Putative glutamate/aspartate transport atp-binding abc transporter protein.
 
 0.958
RSc2261
Putative amino-acid-binding periplasmic (pbp) abc transporter protein.
  
  
 
0.904
RSc0481
Probable amino-acid-binding periplasmic (pbp) abc transporter protein.
  
  
 
0.903
RSc2258
Probable amino acid transmembrane abc transporter protein.
 
 0.673
RSp0428
Putative pseudogene protein.
 
 
 0.591
RSc0082
Putative aminotransferase class-III; protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
    0.564
RSc0083
Hypothetical protein of unknown function duf849, prokaryotic.
       0.561
RSc2260
Probable amino-acid atp-binding abc transporter protein.
 
 
 0.549
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.