STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sltProbable soluble lytic murein transglycosylase precursor transmembrane protein. (650 aa)    
Predicted Functional Partners:
RSc1181
Probable cog1807, 4-amino-4-deoxy-l-arabinose transferase and related glycosyltransferases of pmt family transmembrane protein.
  
    0.751
RSc0089
Putative 5-formyltetrahydrofolate cyclo-ligase; protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.699
RSc0709
Putative transglycosylase transmembrane protein.
  
   
 0.675
RSc2417
Putative permease transmembrane protein.
  
     0.641
RSc2005
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.639
RSc2234
Probable transmembrane protein.
  
     0.638
RSc0087
Putative nadh-ubiquinone oxidoreductase oxidoreductase protein.
       0.634
RSc1978
Probable transmembrane protein.
  
   
 0.634
RSc2224
Putative bacterial ring hydroxylating dioxygenase, alpha subunit; EC_number 1.14.1.-.
      
 0.630
ftsQ
Putative cell division transmembrane protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.
  
   
 0.616
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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