STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0097Putative alkaline phosphatase lipoprotein transmembrane; Belongs to the alkaline phosphatase family. (483 aa)    
Predicted Functional Partners:
RSc0098
Putative alkaline phosphatase signal peptide protein; Belongs to the alkaline phosphatase family.
 
  
 
0.971
folB2
Putative dihydroneopterin aldolase protein.
  
  
  0.913
folB1
Probable dihydroneopterin aldolase protein.
  
  
  0.912
ntpA
Probable datp pyrophosphohydrolase protein.
     
 0.903
thiE1
Probable thiamine-phosphate pyrophosphorylase protein.
    
  0.900
RSc0157
Hypothetical dihydroneopterin aldolase; protein.
     
  0.900
rsgA
Probable gtpase protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
     
  0.900
folE
Putative gtp cyclohydrolaseI(gtp-chI protein.
   
 
  0.900
RSc1450
Probable 6-pyruvoyl tetrahydrobiopterin synthase protein.
     
  0.900
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
     
  0.900
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.